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  • New York University School of Medicine
  • New York, NY, USA

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127 stars written in R
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R toolkit for single cell genomics

R 2,717 984 Updated Apr 22, 2026

Import public NYC taxi and for-hire vehicle (Uber, Lyft) trip data into a PostgreSQL or ClickHouse database

R 2,068 566 Updated Aug 18, 2025

Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

R 1,685 146 Updated Jan 30, 2026

R package that helps create and export ggplot2 charts in the style used by the BBC News data team

R 1,627 271 Updated Jul 2, 2021

simple tools for data cleaning in R

R 1,445 132 Updated Dec 23, 2024

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

R 1,421 616 Updated May 31, 2023

Mastering Shiny: a book

R 1,375 570 Updated Feb 3, 2026

'ggplot2' Based Publication Ready Plots

R 1,242 181 Updated Feb 28, 2026

Data quality assessment and metadata reporting for data frames and database tables

R 1,031 59 Updated Jan 14, 2026

Write reusable, composable and modular R code

R 954 49 Updated Apr 8, 2026

🎄Visualization and annotation of phylogenetic trees

R 927 184 Updated Apr 9, 2026

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

R 827 164 Updated Aug 4, 2024

Tools for making beautiful & useful command line interfaces

R 706 84 Updated Apr 9, 2026

Join tables together on inexact matching

R 697 66 Updated Feb 19, 2026

Inferring CNV from Single-Cell RNA-Seq

R 663 179 Updated Nov 14, 2025

Fast, sensitive and accurate integration of single-cell data with Harmony

R 642 107 Updated Apr 21, 2026

Easily add significance brackets to your ggplots

R 613 46 Updated Mar 29, 2026

Easily send great-looking HTML email messages from R

R 571 83 Updated Apr 3, 2025

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

R 538 104 Updated Apr 6, 2026

Palettes for R based on the Scientific Colour-Maps

R 475 23 Updated Dec 9, 2023

A package to help convert different single-cell data formats to each other

R 465 67 Updated Feb 20, 2026

📈 📊 Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

R 451 26 Updated Dec 28, 2025

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

R 449 160 Updated Feb 18, 2025

R package implementation of Milo for testing for differential abundance in KNN graphs

R 428 26 Updated Apr 23, 2026

View and Browse Code Using Flow Diagrams

R 422 27 Updated Mar 7, 2026

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

R 395 30 Updated Jan 23, 2026

Integrative Composable Visualization Framework for ggplot2

R 392 18 Updated Jan 15, 2026

An R package implementing the UMAP dimensionality reduction method.

R 360 30 Updated Mar 8, 2026

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

R 328 50 Updated Apr 23, 2024

🖍️ R package for colored terminal output — now superseded by cli

R 323 38 Updated Oct 21, 2025
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