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onmaster

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Commits on Jun 18, 2025

• WIP: Local modifications for CAU cluster

  brovolia

  committed
  db4fbad

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Commits on Nov 9, 2023

• Fixing typo

  marchoeppner

  committed
  f2330ad

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Commits on Sep 29, 2023

• Some fixes to call sorting in the CSV parser

  marchoeppner

  committed
  6018896

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• Adding CSV parsing capabilities to the GenDX script

  marchoeppner

  committed
  2014b04

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Commits on Aug 22, 2023

• Cleaning up and adding more documentation

  marchoeppner

  committed
  3e0970d

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Commits on Aug 17, 2023

• Staging 1.6 prelrease

  marchoeppner

  committed
  79c2f89

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Commits on Jul 21, 2023

• Adding summary statistics

  marchoeppner

  committed
  ecab2f9

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Commits on Jul 17, 2023

• Moving the coverage caluclation into the main json object

  marchoeppner

  committed
  ccb4c9c

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Commits on Jul 14, 2023

• Fixing error in parsing of Optitype results

  marchoeppner

  committed
  780af32

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Commits on Jul 13, 2023

• Updating pdf report layout and fixing resource issues with xHLA

  marchoeppner

  committed
  6770807

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Commits on Jul 12, 2023

• Removing non-calls from hla-hd report

  marchoeppner

  committed
  de0cc65

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• Updating deocumentation and PDF reporting

  marchoeppner

  committed
  66e7c4a

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Commits on Jul 10, 2023

• Adding dev documentation and reconciling some processes

  marchoeppner

  committed
  aa6770a

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Commits on Jul 7, 2023

• Adding new XLS reporter

  marchoeppner

  committed
  6f6caeb

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Commits on Jun 8, 2023

• Updating samplesheet format

  marchoeppner

  committed
  0e32c98

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• Various code cleanups

  marchoeppner

  committed
  e0745ae

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Commits on Mar 29, 2023

• Release 1.2 with cleaned up modules and version reporting

  marchoeppner

  committed
  320ad2b

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Commits on Mar 17, 2023

• Adding HLA-HD and adjusting reporting

  marchoeppner

  committed
  bdb1b35

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Commits on Mar 15, 2023

• Various changes including GenDX parser

  marchoeppner

  committed
  ca4f16a

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Commits on Mar 14, 2023

• Adding read merging subworkflow

  marchoeppner

  committed
  81be69f

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Commits on Feb 27, 2023

• Adding REST support

  marchoeppner

  committed
  cf764cb

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Commits on Jan 5, 2023

• Making excel report optional

  marchoeppner

  committed
  c69d2cf

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Commits on Jan 4, 2023

• Adding xls reporting

  marchoeppner

  committed
  4910425

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• Adding json to xls conversion

  marchoeppner

  committed
  f7ce025

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Commits on Jan 2, 2023

• Updating hla gene list for hisat and hlascan

  marchoeppner

  committed
  b30b175

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Commits on Dec 19, 2022

• Making hisat cutoff clearer

  marchoeppner

  committed
  df088c8

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• Fixing reporting to show only actually run tools

  marchoeppner

  committed
  7cfa04b

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Commits on Dec 15, 2022

• Fixing reporting

  marchoeppner

  committed
  d8df8a9

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Commits on Dec 14, 2022

• Fix broken path in docker container

  marchoeppner

  committed
  8e74103

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• Implementing hlascan fully

  marchoeppner

  committed
  3b18abb

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Commits on Aug 1, 2022

• Triggering release

  marchoeppner

  committed
  8ec6c3b

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• Dealing with multi-lane fastQ files for non-aligned reads

  marchoeppner

  committed
  aaaef4c

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• Updating documentation

  marchoeppner

  committed
  1984cf8

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• Increasing max memory for hisat

  marchoeppner

  committed
  0b3a24e

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• Fixing report channel

  marchoeppner

  committed
  5ac769a

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