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23 stars written in Java
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ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files.

Java 18,477 3,409 Updated Oct 29, 2025

The official home of the Presto distributed SQL query engine for big data

Java 16,557 5,503 Updated Nov 7, 2025

Embulk: Pluggable Bulk Data Loader.

Java 1,780 202 Updated Sep 5, 2025

Wasabi A/B Testing service is an open source project that is no longer under active development or being supported

Java 1,137 236 Updated May 26, 2023

cBioPortal for Cancer Genomics

Java 876 741 Updated Nov 6, 2025

INCEpTION provides a semantic annotation platform offering intelligent annotation assistance and knowledge management.

Java 666 163 Updated Nov 6, 2025

A Google Material Design wrapper for GWT

Java 419 122 Updated Apr 28, 2025

The java version of Redux : a predictable state container for apps.

Java 327 18 Updated Jul 16, 2018

A Tool to Annotate and Prioritize Exome Variants

Java 233 54 Updated Nov 4, 2025

WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interacti…

Java 202 94 Updated Oct 6, 2025

command line tool for Apache Lucene

Java 163 51 Updated Jul 10, 2025

jGnash Personal Finance

Java 146 82 Updated Sep 28, 2024

A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"

Java 79 27 Updated Jul 30, 2024

Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM

Java 71 19 Updated Aug 28, 2025

[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM

Java 71 20 Updated Oct 29, 2025

Create Pretty Cucumber Reports on the Fly locally during development

Java 62 30 Updated Oct 6, 2025

A high-performance Java Implementation of RDF2Vec

Java 47 8 Updated Feb 16, 2023

PDF Table Extractor - repository to hold revisable version of code from https://www.cvast.tuwien.ac.at/projects/pdf2table by Burcu Yildiz

Java 39 14 Updated Mar 15, 2024

[in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis

Java 33 14 Updated Jan 2, 2024

Infobuttons are context-sensitive links embedded in the electronic health record (EHR). They use clinical context information from the EHR, such as patient demographics, medications, diagnoses, use…

Java 30 26 Updated Sep 9, 2023

Preliminary Solr DQ / Data Quality experiments and prototype, and SolrJ wrapper utilities

Java 26 6 Updated Jan 27, 2025

This Java library provides support for the NAACCR XML format.

Java 16 7 Updated Sep 23, 2025