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Commits on May 23, 2024

• [#46] remove uid/gid dependencies in Jupyter docker image

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Commits on May 9, 2024

• [#46] replacement for "chown -R -u <UID> -g <GID> /opt/conda"

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Commits on May 8, 2024

• [#42] Ubuntu-22 version of SLURM install script and template

  

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Commits on Jun 10, 2023

• get SLURM working for data-to-compute on ubuntu20

  

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Commits on Jul 2, 2022

• [#28] fix reading of config.json from data object

  

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Commits on Jun 21, 2022

• more beginner doc updates

  

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• PDF generation via Docker

  

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• update filename for 2022

  

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Commits on Jun 21, 2019

• Switch Compute-to-Data to Docker/Jupyter

  

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Commits on Jun 21, 2018

• add SLURM/c2d clean up utility ; fix error in epilog script

  

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• in postinst - irods user must own SLURM launch scripts

  

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• cleaned up python rule files

  

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• error free slurm pro & epilogs when compute functions not present

  

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• slurm scripts now check for existence of irods_compute_functions

  

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• compute-to-data: clean up files

  

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• compute-to-data: validate user on HPC side via password

  

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• include compute to data mods to slurm_epilog, tidy up CMakeLists for compute to data

  

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• add commented c2d section to compute epilog

  

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• changes for singularity + slurm

  

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• restore python replicate-trim command to epilog

  

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• singularity install no longer duplicated in install_munge_and_slurm

  

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• refactor irods_slurm var sets/gets into irods_compute_functions

  

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Commits on Jun 5, 2018

• fixed d2c thumbnail demo

  

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• finalizing package for D2C

  

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• changes in place for job launch

  

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• files are gone in D2C, so do not chown them in postinst

  

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Commits on Jun 4, 2018

• rearrange funcs , get_irods_username needed for d2c and c2d

  

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• needed util HPC-side to get phys path

  

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• reorganized rule code, mostly moved get_* funcs to /etc/irods/data_to_compute

  

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• tightening up K=V and 'K','V' stuff, get_resky_from_roley stuff

  

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• remote cannot serialize vars, route Slurm calls through rule language

  

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• slurm jobs will be spawned by irule, cmdline style

  

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• added configurable admin credentials file in .json

  

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• added thumbnail_read_config.py - read thumbnail job params on Un*x commandline

  

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• refined some command line utilities

  

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