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1. RNAseq-Analysis-Walkthrough RNAseq-Analysis-Walkthrough Public

   (UNFINISHED) A guide in RNA-seq analysis and a look back and walkthrough of what I learned over my masters thesis

2. align_pc align_pc Public

   Snapshot of my PC/GPU-CUDA workspace for running models/tools for the AlignBio2025 tournament (instead of my regular Mac-ARM setup). You will find code that is compatible with your NVIDIA GPU to ru…

   Jupyter Notebook

3. BioML-Dashboard BioML-Dashboard Public

   (IN PROGRESS) Weekly-report style dashboard to summarize recent publications and codebases released in the CompBio field relevant for fast-paced researchers and engineers. I also want it to give th…

   Python

4. CYPomeExplorer CYPomeExplorer Public

   (~70% done) Reproduction of the paper by Tea Kuvek et al (Binding Site Vectors Enable Mapping of Cytochrome P450 Functional Landscapes). Link: https://pubs.acs.org/doi/10.1021/acs.jcim.5c02705

   Portugol

5. CypSurf CypSurf Public

   (DONE) GPU-parallelized implementation of the BSV generation step (from Kuvek et al. 2026). This is basically the code on my PC setup for this side project.

   Python

6. OpenProvean OpenProvean Public

   (WILL START SOON) Reproduction of the Provean bioinformatic tool via open source code. This is the side project I most want to commit my time to and finish, because the Provean webserver is discont…

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