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  • Harvard Medical School Laboratory of Systems Pharmacology
  • Boston, MA

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@nocturnal @sorgerlab @pysb @nf-core

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Live shader coding tool and Shader Showdown workhorse

C++ 1,493 119 Updated Feb 18, 2025

A modern Python application packaging and distribution tool

Rust 20 Updated Jun 12, 2026

A python parametric CAD scripting framework based on OCCT

Python 5,302 505 Updated Jun 14, 2026

Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines

Groovy 53 31 Updated May 7, 2026

A collection of Groovy classes that provide utility services to nextflow pipelines.

Groovy 13 Updated Oct 25, 2022

A DSL for data-driven computational pipelines

Groovy 3,414 784 Updated Jun 15, 2026

Unreal Engine 5 FPS Starter C++ project ported to AngelScript

AngelScript 24 3 Updated Oct 26, 2023

C library for reading DICOM files

C 36 13 Updated Jun 6, 2026

serve Zarr datasets via HTTP

Python 32 2 Updated Jun 12, 2023

An OMERO CLI plugin for creating transfer packets between OMERO servers.

Python 19 19 Updated Jun 5, 2026

Supporting data files and code for the publication by Shilts et al.

R 31 3 Updated Aug 28, 2022

Repository containing all calculations of channel capacity in T cell kinetic proofreading network.

Jupyter Notebook 2 1 Updated Apr 1, 2021

A web-based volume viewer for large-scale multichannel volume data

Rust 6 Updated Dec 20, 2023

A tool to convert raw image files to the OME-Zarr format.

Python 3 Updated Sep 1, 2023

Voxel module for Godot Engine

C++ 3,720 327 Updated Jun 14, 2026

deck.gl Hybrid Render Test

JavaScript 2 1 Updated Apr 12, 2023

๐Ÿ‘“ ๐Ÿš Make your xonsh RC file installable with awesome snippets of code.

Python 99 21 Updated May 26, 2026

Bayesian Segmentation of Spatial Transcriptomics Data

C++ 206 41 Updated May 18, 2026

Matrix and Analysis Metadata Standards

9 3 Updated Mar 5, 2023

Automated Stitching of Tile Scanned Fluorescence Microscope Images of Human Brain Tumor Cells

MATLAB 7 Updated Aug 21, 2019

Bucklescript bindings for XState state machine

OCaml 14 2 Updated Jan 13, 2019

A powerful, accurate, and easy-to-use Python library for doing colorspace conversions

Python 186 20 Updated Nov 12, 2019

Yet Another Python Profiler, but this time multithreading, asyncio and gevent aware.

Python 1,716 82 Updated May 22, 2026

Compositional JSON encode/decode library for BuckleScript

OCaml 272 50 Updated Dec 6, 2023

Line-granularity, thread-aware deterministic and statistic pure-python profiler

Python 456 28 Updated Sep 6, 2024

Pattern matching for python

Python 219 14 Updated Aug 14, 2014

A module for querying the DOM tree and writing XPath expressions using native Python syntax.

Python 127 5 Updated Jun 13, 2018

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

Python 690 118 Updated Dec 25, 2025
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