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Starred repositories

12 stars written in Jupyter Notebook
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This repository contains implementations and illustrative code to accompany DeepMind publications

Jupyter Notebook 14,438 2,780 Updated Aug 22, 2025

🔅 Shapash: User-friendly Explainability and Interpretability to Develop Reliable and Transparent Machine Learning Models

Jupyter Notebook 2,972 355 Updated Oct 3, 2025

Biological foundation modeling from molecular to genome scale

Jupyter Notebook 1,436 177 Updated Sep 22, 2025

Repository for suggesting new lineages that should be added to the current scheme

Jupyter Notebook 1,067 104 Updated Nov 8, 2025

A library for creating complex UpSet plots with ggplot2 geoms

Jupyter Notebook 533 36 Updated Sep 23, 2025

Open-source device for measuring cardiograpgy signals with a GUI for easier handling and additional software for analyzing the data.

Jupyter Notebook 303 33 Updated Sep 15, 2025

Deep learning infrastructure for genomics

Jupyter Notebook 257 35 Updated Sep 29, 2021

List of resources for learning bioinformatics, from beginner to advanced

Jupyter Notebook 106 28 Updated Feb 16, 2018

Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV

Jupyter Notebook 16 6 Updated Jan 9, 2025

Practicing basic ML algorithms on simple datasets

Jupyter Notebook 7 3 Updated Sep 18, 2021

This generator can be used to generate a specified number of phylogenetic trees (or clusters of trees in the cluster version) in Newick format with a variable number of leaves and with some level o…

Jupyter Notebook 2 Updated Aug 27, 2025