This repo is a list of papers that discuss errors in research due to software errors

Python package template for new research software projects

A repository for documentation and processes for software development in a research setting. This repo was created on Aug 22 2018 and is intended to be an evolving work.

The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

Shiny or similar development for AcaMedics

Parallel MCMC implementation, the core package of the Quantifying Uncertainty project

Tools for test driven data-wrangling and data validation.

A gcc/cython/distutils wrapper for compiling Cython and C code directly from python

Eliot: the logging system that tells you *why* it happened

A Python library for W3C Provenance Data Model (PROV)

Version Control with Git

Fast NumPy array functions written in C

The zoon R package

A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.

Code to flatten CellML 1.1 models into 1.0 models

Trac plugin for code comments and sending them to tickets

GIT utilities -- repo summary, repl, changelog population, author commit percentages and more

A library that provides flexible and easy-to-use tools to parametrize Python unit tests, especially those based on unittest.TestCase.

Code for the main Open Source Health Check application

💾 peer-to-peer sharing & live syncronization of files via command line

Interchangeably merge in and split out subtree history

Elegant process isolation in pure python

RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.

Macros in Python: quasiquotes, case classes, LINQ and more!

OpenCOR is a cross-platform modelling environment, which can be used to organise, edit, simulate and analyse CellML files.

Emscripten: An LLVM-to-WebAssembly Compiler

CellML Core Specification Draft Development

CellML Secondary specification for systems differential-algebraic equations

COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.