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kalininalab
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ALPAR
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Commits on Jul 6, 2026
alpar for web version updated to 1.3.12
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ml subcommand error fixed
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train and test file creation on datasail module added, can be used for extra downstream analysis, not needed for alpar automatix
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Commits on Jul 2, 2026
diamond version pinned
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Commits on Jul 1, 2026
prediction submodule bugs solved
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error fixed in prediction pipeline, version updated to 1.3.10
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alpar added to alpar.yaml
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Commits on Jun 29, 2026
prediction submodule updated to easy maintenance
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Commits on Jun 16, 2026
datasail error causing failure when it is called with antibiotic and stratification fixed, version updated
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Commits on May 18, 2026
ALPAR tool results added
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Commits on May 11, 2026
fixed issues version updated
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Commits on May 8, 2026
qc not tested strains are causing phenotype table creation error fixed, version updated to 1.3.5
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Commits on May 7, 2026
cd hit env name fixed
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prokka database creator environment error fixed
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Commits on May 6, 2026
fixed issues, working copy of v1.3.1
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full automatic pipeline fixed
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example files are deleted
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version updated to 1.3.0
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datasail and ml modules are fixed
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Commits on Apr 29, 2026
some changes
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binary table pipeline is fertig
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Commits on Apr 28, 2026
working binary table creator pipeline
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imports fixed
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conda calls are added
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env files are added
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clean start
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nextflow started
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Commits on Apr 27, 2026
Fix local testing environment and automatix crash
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Commits on Apr 26, 2026
docker deleted, unnecessary
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Implement reviewer revisions: Logistic Regression baseline, Bakta integration with auto-db download, automated QC module, and GWAS-ML integration
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Commits on Mar 12, 2026
Change example files link to new URL
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Commits on Mar 3, 2026
flowchart path corrected again, to trigger the build
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Fşowchart path updated for readthedocs and github
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Merge pull request #21 from kalininalab/memory-optimization-for-binary-table-creation
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cleaned the code
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