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Talk_JAXomics Public
Lecture on reproducible research for Jackson Lab short course on omics analysis
TeX Other UpdatedApr 27, 2026 -
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Tools4RR Public
Materials for a one-credit course on reproducible research
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steps2rr Public
Initial steps toward reproducible research (a minimal tutorial)
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pkg_primer Public
R package primer: a minimal tutorial on writing R packages
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ProgrammingNotes Public
My personal notes on various programming languages and tools
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simple_site Public
Minimal tutorial on making a simple website with GitHub Pages
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knitr_knutshell Public
knitr in a nutshell: a brief guide to knitr
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github_tutorial Public
git/github guide: Karl's minimal tutorial
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GWASapi Public
Forked from rqtl/GWASapiR package to connect to the NHGRI-EBI catalog of GWAS summary statistics
R Other UpdatedMar 20, 2026 -
QTL analysis software for high-dimensional data and complex cross designs
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qtl Public
R/qtl: A QTL mapping environment
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aRxiv Public
Forked from ropensci/aRxivProgrammatic interface to the Arxiv API
R Other UpdatedMar 15, 2026 -
circplot Public
R package to facilitate making plots as circles
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xoiGBS Public
R package for analysis of recombination and crossover interference from GBS data on a backcross
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qtl2pleio Public
Forked from fboehm/qtl2pleioTesting pleiotropy vs. separate QTL in multiparental populations
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BMI883 Public
Web site for BMI 883 course on "Biomedical data science professional skills"
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BMI881 Public
Web site for BMI 881 course on "Biomedical data science scholarly literature"
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BMI881_fall2025 Public
BMI 881 (Biomedical data science scholarly literature 1) from Fall, 2025
Ruby Other UpdatedJan 15, 2026 -
BMI883_fall2025 Public
BMI 883/4 (Biomedical data science professional skills) from Fall, 2025
TeX Other UpdatedJan 14, 2026 -
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miner_book Public
A bookdown book on R and Minecraft
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broman Public
R/broman: A package with Karl Broman's personal R code
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xoi Public
R/xoi: Tools for analyzing crossover interference
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negenes Public
Estimating the number of essential genes in a genome on the basis of data from a random transposon mutagenesis experiment, through the use of a Gibbs sampler.
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