Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Genome browser 🧬👀🚀

Assembly and binning of metagenomes

Obsidian 🤝 Neovim (actively maintained version)

Get daily push notifications when you have photo memories in Immich

Julia API for KEGG

Sync PDF attachments between Zotero and your ReMarkable back and forth

Julia Workflows for Data-Intensive Research

Julia port of the Carpentries lesson using inflammation data

Interactive data visualizations and plotting in Julia

🎯 A command line download/upload tool with resume.

Read-based functional profiling of microbiome sequencing data

Scientific Inkscape: Inkscape extensions for figure resizing and editing

Transparent, NumPy-only deep learning framework for teaching, small-scale projects, prototyping, and reproducible experiments. No CUDA, no giant dependency tree. Batteries included: VJP autograd, l…

paris - world's first decentralized trained open-weight diffusion model

UniProt-to-ML toolkit for microbiome function prediction with cleaning, embeddings, and GNN/FFNN data interfaces.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Zotero plugin to automatically move attachments and link them

A flexible pipeline for complete analysis of bacterial genomes

Dashboard for NIH changes since January 20, 2025

Emoji picker for Wayland using wofi and wl-clipboard

High performance self-hosted photo and video management solution.

Simple and efficient SDF calculation.

Get the contributor stats summary from all repos of any given organization

General bibliography manager in pure Julia

Text and code for the second edition of Think Bayes, by Allen Downey.

Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.