Framework for AI agents to build and maintain a digital brain through Obsidian wiki using Karpathy's LLM Wiki pattern

A spatial research tool that explores using AI to augment thinking, not replace it.

Pathway signal flow calculator

Panoramic stitching of single cell data

python wrapper for DESeq2, compatible with scanpy

Positron, a next-generation data science IDE

GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data

Cell types enrichment analysis

Here we present a method to plot the outputs of RFMIX version 2

Tools to work with GWAS-VCF summary statistics files

This is an enhanced version that fits my project

A tool to automate analyses in admixture, a program used for detecting population structure with SNP data.

starmie: plotting and inference for population structure models 🌟

Fast analysis and visualization of latent clusters in population genetic data

Sparse k-means clustering with feature selection

AIMsetfinder is a collection of Rscripts to identify sets of Ancestry Informative Markers (AIMs), that minimize the logloss error of a naive Bayes classifier.

The flare program performs local ancestry inference

A software package for local ancestry inference and haplotype phasing

PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS par…

Whole-exome study of obesity and diabetes in Russian population

Practical Cheminformatics Tutorials

Notes on SNP-related tools and genome variation analysis

An interactive UMAP visualization of the MNIST data set.

A 3D visualisation of clustered data using UMAP and three.js

An extremely fast Python package and project manager, written in Rust.