A minimap2 frontend for PacBio native data formats

Makes your AI agent think like the laziest senior dev in the room. The best code is the code you never wrote.

Successor of bwa-mem for short-read alignment

Tools to gather evidence for structural variation via breakpoint detection.

Safe Rust wrapper around the abPOA partial order aligner

Quick Unique k-mer Assembly Assessment Kit

Virtual Medicinal Chemist, SAR reasoning

Identifies break points using long read data

An extensible and performant aligner and read mapper

A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc

Dear ImGui: Bloat-free Graphical User interface for C++ with minimal dependencies

EUI-NEO is a cross-platform, high-performance, low-overhead C++17 GPUI framework

HiFi+CiFi Assembly & Scaffolding workflow

KaryoScope: rapid, alignment-free sequence annotation for the pangenome era

Hierarchical k-mer sets

Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.

HLA typing from PacBio Reads

Tool to flag foldback and chimeric artifacts in long-read sequence alignment files

rust tool to choose the best read alignment between haploids to a diploid reference genome

A small, header-only, parallel implementation of kmeans clustering for arbitrary-long byte vectors.

Fast C++ logging library.

DeepSAP repository for documentation and supplemental data