Stars
CaCo: A program for predicting carbon source competition and ecological type of interaction from genomes.
This pipeline provides a complete workflow for processing metagenomic sequencing data to reconstruct and analyze microbial genomes (MAGs). It integrates state-of-the-art tools for each step, from r…
This is an R package for element cycle analysis using metagenomic data.
Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data
Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies
CMiNet is an R package designed to generate consensus microbiome networks by integrating results from multiple network construction algorithms
Metagenomic diversity index calculator and example .faa contig data.
R script to calculate soil organic carbon and nitrogen stocks at Equivalent Soil Mass
The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and micr…
A complete pipeline for metagenomic analysis
R package to perform calculations on data produced from quantitative stable isotope probing (qSIP) experiments
Data and algorithms to estimate global variation in soil carbon potential through improved cropland management. Related to Lessmann et al. (2021)
Replacement icons for popular apps in the style of macOS Big Sur
Microbial Explicit Model Consortium: an R package supporting exploration of microbial explicit soil carbon models
The codes of one, two, three and five-pool models of Tarlee and Brigalow along with the code of LFO-CV are provided
R scripts for downloading SoilGrids v2 data
R package for flexible correlation matrices based on ggplot2