My Python scripts to make high-quality figures for publications in top AI conferences and journals.

This repository includes the official implementation of OpenScholar: Synthesizing Scientific Literature with Retrieval-augmented LMs.

VertexWiseR R package : a suite of tools to extract, manipulate, analyze, and visualize cortical surface and hippocampal vertex-wise data

Versatile Cardiovascular Signal Generation with a Unified Diffusion Transformer

Tractography Visualization on the web

A collection of various utilities for GWAS summary statistics

Integrative pathway enrichment analysis of multivariate omics data

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

TransBrain: A computational framework for translating brain-wide phenotypes between humans and mice

Neuroimaging Spatial Colocalization Environment (under development).

GWAS Tutorial for Beginners

Awesome Reasoning LLM Tutorial/Survey/Guide

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

This repository contains scripts showcasing how to download iEEG data from the data base, perform preprocessing and preliminary analyses.

GSTools - A geostatistical toolbox: random fields, variogram estimation, covariance models, kriging and much more

estimating fMRI timescale maps

Repository for the textbook 'Improving Your Statistical Inferences' by Daniel Lakens

A toolbox for custom data visualization in the subcortex and cerebellum

A library for creating complex UpSet plots with ggplot2 geoms

Python interactive dashboards for learning data science

Code package that allows meta analyses of unsupervised behavior results

Lecture materials for Cornell CS5785 Applied Machine Learning (Fall 2024)

catchaMouse16: CAnonical Time-series CHaracteristics for Mouse fMRI