Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

JVM-based interpreter for the R language for the statistical analysis.

Robust and efficient workflows using a simple language agnostic approach

Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

Multi-sample somatic variant caller

Analyze CRISPR and shRNA functional genetic screening data

GWA mapping with C. elegans

A nextflow pipeline to call single nucleotide and structural variants in viral populations

Genomic data and code to accompany the SKAT analysis of Million Mutation Project strains dye-filling phenotypes reported in Timbers et al.

A Nextflow-based set of scripts for running the MEG Antimicrobial Resistance AmrPlusPlus pipeline

Differential gene, transcript, exon, and splice junction testing framework. (pre-alpha)

Statistical Analysis of multiplexed CRISPR / shRNA Screens using MAGeCK (deprecated)

Nextflow pipeline for small RNA seq mapping

Pipeline for copy number variant calling from Whole Exome sequencing data using CODEX

Annotate CRISPR and shRNA screening libraries

Nextflow pipeline for small RNA seq mapping