A local RAG suitable for running on-device such as with a laptop, no GPU needed, but capable of fitting some RAG layers into GPU acceleration. This entire codebase was vibe coded with Perplexity AI…

Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

Google Scripts Project to generate a RSS feed based on labeled emails in your GMail Account

Google Scholar Alert to RSS

📝 Easily create a beautiful academic website using Hugo, GitHub, and Netlify

Interactive visualization of assembly graphs

Interactive metro maps on an HTML canvas

An awesome repository of community-curated applications of ChatGPT and other LLMs in computational biology

An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

2025 RAD microbes boot camp

Repository for general metagenomics Nextflow pipeline

ATS and Human-friendly Resume Writer in Markdown.

This plugin helps you synchronize your Obsidian vault with cloud storage using Rclone's bisync feature. It provides a simple interface to keep your notes in sync across different devices.

Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.

Templates to create CVs/Resumes with Quarto

📄 Easily create your resume with Markdown on VSCode / Typora / Obsidian

A beginner-friendly Docker project focusing on container management and image creation, featuring exercises on setting up a web server and deploying a simple app

Obsidian PDF export enhancement plugin

An obsidian plugin which turns a math code block into a full featured calculator

Makes creating footnotes in Obsidian more fun!

An Obsidian plugin that formats and styles your notes with a focus on configurability and extensibility.

A Tampermonkey UserScript to display your Hypothes.is annotations in search results on Google, Bing, and more. Easily access and filter notes directly from your searches.

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

A cross-platform context-aware key remapper.

Qiime2 snakemake pipeline

Sync notes between local and cloud with smart conflict: S3 (Amazon S3/Cloudflare R2/Backblaze B2/...), Dropbox, webdav (NextCloud/InfiniCLOUD/Synology/...), OneDrive, Google Drive (GDrive), Box, pC…

The files and presentation from the Cytometry Core Facility flow cytometry data analysis course in R

Enhancing {ggplot2} plots with statistical analysis 📊📣