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Commits on Feb 11, 2026

• update the latest interface readme and test scripts

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Commits on Feb 2, 2026

• refine the filtering api

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Commits on Jan 4, 2026

• add ont platform support; add pandas dependency for collection stat

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Commits on Jan 3, 2026

• add denovo/graph genome filter interface

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Commits on Nov 11, 2025

• sync latest breakpoint signature test; add filterasm test script; add tag

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Commits on Mar 14, 2025

• refine double strand break signatures

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Commits on Feb 16, 2025

• add union api; add advunion for accepting read ids and vcfs; add double strand break analysis

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Commits on Jan 28, 2025

• sync readme between minisv.rs and minisv.py; debug translocation merge code; add ensembleunion for collapsing SV union set; add doublestrandbreak for double strand break signature analysis

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Commits on Jan 23, 2025

• add initial support for double strand break signature

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Commits on Jan 22, 2025

• add ensemble of minisv union script

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Commits on Dec 8, 2024

• update annotation and asm filter script; add test script

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Commits on Nov 7, 2024

• adjust the filter asm conditions

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Commits on Nov 6, 2024

• add module for typing and util

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• sync latest sv typings; add filtering by assembly with sv type for all sv callers

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Commits on Oct 28, 2024

• reproduce isec, merge, eval and annot; add test scripts

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Commits on Oct 23, 2024

• reproduce minisv extract

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Commits on Oct 10, 2024

• add severus/sniffles2/msv filtering from asm

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Commits on Jun 10, 2024

• 1. add whatshap haplotag for filtering SV; 2. remove cython codes; 3. clean the gafcall remaining names

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• corrected gafcall to minisv names

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Commits on Jun 9, 2024

• Merge branch 'main' of github.com:qinqian/minisv.py

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• debug the renamed python package

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Commits on May 22, 2024

• remove js, it is a separate repo at lh3/minisv

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• r133: clearer CMD help for extract

  

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• r132: allow shorter reads

  

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• r131: search for the best count threshold

  

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• r130: option to count inversions differently

  

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• r129: another change for SVision-Pro

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• r128: parse SVision-Pro VCF

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• r127: allow to filter by supporting read count

  

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• r126: added mergeflt

  

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• r125: parse GRIPSS VCF

  

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• r124: output "foldback" INFO

  

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• r123: record >< vs <> reads during merge

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• r122: fixed wrong orientation for inversions

  

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• r121: convert to VCF

  

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