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  • X-Wing Public

    Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations

    R 17 3 GNU General Public License v3.0 Updated Feb 19, 2026
  • POP-TOOLS Public

    Valid and Powerful Machine-Learning-Assisted Genetic Association Studies

    Python 23 3 GNU General Public License v3.0 Updated Jan 2, 2026
  • mlearner Public

    Detecting and interpreting genetically-driven heterogeneous treatment effects.

    R 1 Updated Nov 3, 2025
  • PUMAS Public

    Fine-tuning polygenic risk score models using GWAS summary statistics

    R 54 10 MIT License Updated Oct 19, 2025
  • GSUB Public

    An analytical approach for GWAS-by-Subtraction

    R 12 1 GNU General Public License v3.0 Updated May 27, 2025
  • PIGEON Public

    Polygenic gene-environment (GxE) interactions inference

    Python 13 2 GNU General Public License v3.0 Updated May 27, 2025
  • psps Public

    Task-agnostic machine-learning-assisted inference

    Python GNU General Public License v3.0 Updated Feb 5, 2025
  • PENGUIN Public

    A variance component analytical framework to control for genome-wide confounding effects in epidemiologic association studies.

    R 2 MIT License Updated Oct 22, 2024
  • pspa Public

    post-prediction adaptive inference

    R 1 1 GNU General Public License v3.0 Updated Sep 17, 2024
  • POPInf Public archive

    Assumption-Lean and Data-Adaptive Post-Prediction Inference

    R 1 GNU General Public License v3.0 Updated Sep 9, 2024
  • PRS-DEMO Public

    Train and calculate PRS scores using popular PRS methods.

    R 2 Updated Nov 1, 2023
  • QUAIL Public

    A unified framework to estimate genetic effects on the variance of quantitative traits

    HTML 12 1 GNU General Public License v3.0 Updated Mar 16, 2023
  • PARSEC Public

    partitioning heritability and genetic covariance by direct and indirect paths

    R Updated Jan 24, 2023
  • DONUTS Public

    DONUTS: Decomposing nature and nurture using GWAS summary statistics

    R 6 Updated Jan 24, 2023
  • SUPERGNOVA Public

    Python 30 11 MIT License Updated Oct 18, 2021
  • A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.

    Python 3 2 GNU General Public License v3.0 Updated Sep 20, 2021
  • TITANS Public

    R 5 1 Updated May 14, 2021
  • ORIGAMI Public

    R 1 Updated Feb 5, 2021
  • BADGERS Public

    Python 5 1 Updated Jan 28, 2019