Pre-installation Instructions

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This installation requires the pre-installation of the cmake tool,

a C++ compiler, and the libraries: libdivsufsort and sdsl.

For Linux, you can install libraries libdivsufsort and sdsl via

$ ./pre-install.sh

Basic Instructions

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The shell command `make -f Makefile.32-bit.gcc' should compile this

program for 32-bit integers.

The shell command `make -f Makefile.64-bit.gcc' should compile this

program for 64-bit integers. This requires double the amount of memory.

After compilation the binary `maw' will be created in the working

directory, e.g. you may call it from this directory via

S ./maw -a DNA -i ./data/1.fasta -o 1.fasta.out -k 2 -K 10