A list of software for pangenomics

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by …

Viral Evolution ReconStructiOn (VERSO). The manuscript of the method is available at: https://www.cell.com/patterns/fulltext/S2666-3899(21)00022-2

Parse NCBI taxonomy and accessions to find taxonomic assignments

tools for assessing the accuracy of genome assemblies

A Pure-Python parser of HMMER3 output

Standalone scripts used in the lab's various bioinformatics workflows

convert bam file to Pacbio m5 format

The Elements of Statistical Learning (ESL)的中文翻译、代码实现及其习题解答。