Lists (12)
Starred repositories
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.
A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc
This project is dedicated to collecting high-quality macOS software and organizing them systematically by different categories for easy search and use.
A CLI-first interface for AI agents to work with notebooks
Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 60-95% fewer tokens, same answers. Library, proxy, MCP server.
Self-organizing AI second brain for Obsidian + Claude Code. Drop any source and Claude reads, links, and files it into one connected knowledge graph of plain Markdown you own. AI note-taking, perso…
An Obsidian plugin that embeds Claude Code/Codex as an AI collaborator in your vault
Cognee is the open-source AI memory platform for agents. Give your AI agents persistent long-term memory across sessions with a self-hosted knowledge graph engine.
A genome diagram generator for microbes and organelles
Plotting scripts for long read sequencing data
Cheatsheet of frequently used commands in Linux
Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.
Build your own 'AirTags' 🏷 today! Framework for tracking personal Bluetooth devices via Apple's massive Find My network.
A modern, open-source personal flight tracking system
A genome browser designed for complex structural variants and long reads.
Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
Reconstruct the three-dimensional structure of extrachromosomal DNA
Structural variation caller using third generation sequencing
A command-line tool to download photos from iCloud
NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
A bioinformatics tool for working with modified bases
Somatic structural variant caller for long-read data
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
remove ambient mtDNA background from mgatk output using CellBender
Phyllochron is an ILP method that solves the Maximum Likelihood Longitudinal Assignment Problem under the Longitudinally Observed Perfect Phylogeny Model.