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@staphopia @Read-Lab-Confederation @conda-forge @bioconda @MetaSUB @bactopia

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37 stars written in Rust
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A refreshingly simple data-driven game engine built in Rust

Rust 45,398 4,480 Updated Apr 2, 2026

🤖 Just a command runner

Rust 32,560 711 Updated Apr 1, 2026

Fast, small, and fully autonomous AI personal assistant infrastructure, ANY OS, ANY PLATFORM — deploy anywhere, swap anything 🦀

Rust 29,246 4,135 Updated Apr 2, 2026

Fast, collaborative live terminal sharing over the web

Rust 7,422 281 Updated Jun 19, 2025

Painless compression and decompression in the terminal

Rust 3,462 126 Updated Mar 20, 2026

CLI search and replace | Space Age seD

Rust 2,022 27 Updated Sep 30, 2025

An AI agent for teams, communities, and multi-user environments.

Rust 2,010 297 Updated Apr 2, 2026

Publish Rust crates from CI with a Release PR.

Rust 1,334 156 Updated Apr 1, 2026

Blazingly fast terminal recorder that generates animated gif images for the web written in rust

Rust 1,221 36 Updated Mar 2, 2026

A tool to create visual HTML reports from collections of CSV/TSV tables

Rust 674 40 Updated Mar 30, 2026

Rust crates to work with the Conda ecosystem.

Rust 428 190 Updated Apr 2, 2026

Secure, distributed, append-only log

Rust 351 35 Updated Feb 18, 2026

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Rust 301 19 Updated Feb 3, 2026

Randomly subsample sequencing reads or alignments

Rust 257 20 Updated Apr 1, 2026
Rust 247 17 Updated Apr 1, 2026

Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

Rust 246 14 Updated Oct 12, 2025

Command line scientific data management tool

Rust 231 9 Updated Nov 4, 2024

A pairwise sequence aligner written in Rust

Rust 152 14 Updated Jan 27, 2026

Minimal but speedy quality control for nanopore reads in Rust 🐻

Rust 137 9 Updated Sep 16, 2024

Split k-mer analysis – version 2

Rust 104 9 Updated Mar 27, 2026

expressions on VCFs

Rust 91 3 Updated Mar 17, 2026

Simple and transparent support for compressed files.

Rust 81 8 Updated Feb 27, 2026

Genome size estimation from long read overlaps

Rust 81 4 Updated Mar 9, 2026

👷 Fasten toolkit, for streaming operations on fastq files

Rust 81 7 Updated Oct 24, 2025

a tool to filter sites in a FASTA-format whole-genome pseudo-alignment

Rust 65 2 Updated Jun 16, 2025

alignment-free coverage calculation for metagenomic binning >100 times faster

Rust 50 2 Updated Mar 13, 2025

Remove human reads from a sequencing run

Rust 48 4 Updated Mar 30, 2026

kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

Rust 45 3 Updated Nov 5, 2025

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

Rust 29 2 Updated Aug 20, 2025

Compute a pairwise SNP distance matrix from one or two alignment(s)

Rust 26 1 Updated Sep 12, 2024
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