This is a workflow template of the systemPipeR Workflow Management System (WMS). Detailed information about this specific workflow is available here.
To learn how to design, set up, and run workflows using systemPipeR, users want to consult the official user manuals:
A list of all available workflow templates and additional project information can be found on the project's dedicated website: systempipe.org.
Download of Workflow
To obtain this workflow, run one of the following commands. The <download_link>
is located under the green "Code" button on the top right of the repository,
with the HTTPS option generally being the most straightforward for most users.
From the command-line:
git clone <download_link>
From R (no Git CLI required):
gert::git_clone("<download_link>")
Alternative R-based setup that populates the param and data directories of
the downloaded workflow environment in separate steps (no Git CLI required).
For more information, consult the help pages: ?genWorkenvir_gh, ?getParam_gh, and ?getData_gh.
library(systemPipeRdata)
if (packageVersion("systemPipeRdata") < "2.14.5") { stop("systemPipeRdata >= 2.14.5 is required.", call. = FALSE) }
genWorkenvir_gh(url="https://github.com/systemPipeR/sprwf-new.git", "sprwf-new", force_min_version=FALSE)
setwd("sprwf-new)
getParam_gh(param_repo="https://github.com/systemPipeR/sprwfcmp-param.git")
getData_gh(data_repo="https://github.com/systemPipeR/sprwfcmp-data.git")