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octarine Public
A fast, lightweight 3D viewer for Python based on WGPU
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fastcore-rs Public
Reimplementation of navis functions in Rust.
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nglscenes Public
Generate and manipulate neuroglancer scenes
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cloudblender Public
Blender wrapper for cloud-volume
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clio-py Public
Forked from janelia-flyem/clio-pyPython client for clio-store
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trimesh Public
Forked from mikedh/trimeshPython library for loading and using triangular meshes.
Python MIT License UpdatedMar 17, 2026 -
mlx-knn Public
K-nearest neighbors (k-NN) search for 3D point clouds using MLX Metal kernels
Python MIT License UpdatedMar 16, 2026 -
mlx-nn Public
Brute force nearest-neighbour lookup for Apple silicon
Python GNU General Public License v3.0 UpdatedMar 14, 2026 -
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warpfield Public
Forked from danionella/warpfieldGPU-based 3D non-rigid volumetric registration
Python MIT License UpdatedMar 11, 2026 -
sea-serpent Public
A dataframe-like wrapper around the seatable API.
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neuprint-python Public
Forked from connectome-neuprint/neuprint-pythonPython client utilties for interacting with the neuPrint connectome analysis service
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 2, 2026 -
cmtk_apply Public
Python-native library for applying CMTK transformations.
Python MIT License UpdatedFeb 11, 2026 -
CAJAL Public
Forked from CamaraLab/CAJALA Python package using Gromov-Wasserstein distance to compare cell shapes
C MIT License UpdatedJan 20, 2026 -
ncollpyde Public
Forked from clbarnes/ncollpydeMesh containment and line segment intersection queries in Python (over rust)
Python MIT License UpdatedNov 6, 2025 -
tanglegram Public
Plot tanglegrams from two dendrograms
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teable-client Public
Forked from volkantasci/teable-client🔧 Teable is a professional Python client library for the Teable API, providing an object-oriented interface to manage tables, records, and views. ✨ It offers complete API coverage, advanced queryin…
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pygfx Public
Forked from pygfx/pygfxA python render engine running on wgpu.
Python BSD 2-Clause "Simplified" License UpdatedMar 5, 2025 -
brainmappy Public
Python tools to interact with Google brainmaps API
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BridgingRegistrations Public
Forked from jefferislab/BridgingRegistrationsBridging registrations to convert between different Drosophila template brains
UpdatedDec 10, 2024 -
python_template Public
Cookie cutter template for Python projects
Python GNU General Public License v3.0 UpdatedOct 12, 2024 -
flysim Public
Easy leaky integrate & fire models of the fly brain
GNU General Public License v3.0 UpdatedOct 12, 2024 -
aann Public
All nearest-neighbor search using Delaunay graphs
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xform Public
A package to transform spatial data from one space to another.
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shull Public
S-Hull Delaunay triangulation implemented in Rust (with Python bindings)
Rust GNU General Public License v3.0 UpdatedFeb 4, 2024 -
distframe Public
A DataFrame-like wrapper around condensed distance matrices.
Python GNU General Public License v3.0 UpdatedAug 31, 2023 -
EMAnnotationSchemas Public
Forked from CAVEconnectome/EMAnnotationSchemasRepository to hold schemas for annotations of volumetric imaging data focused on EM
Python MIT License UpdatedJul 24, 2023 -
CATMAID-to-Blender Public
Plugin for Blender to interface with CATMAID Server and Pull Data
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pynrrd Public
Forked from mhe/pynrrdSimple pure-python module for reading and writing nrrd files.
Python MIT License UpdatedOct 9, 2022 -
nblast-knn Public
Playground for tinkering with improving KNN for NBLAST
Jupyter Notebook GNU General Public License v3.0 UpdatedOct 3, 2022
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