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Thoroughly Caffeinated
Thoroughly Caffeinated

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@GordonLab @ClinDesk @TheMITTech @BradnerLab @mit @Chaudhuri-Lab @mcwdsi

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Showing results

cfRNA QC + fragmentomics in a single BAM pass. Forked from seqeralabs/RustQC.

Rust 1 Updated Apr 28, 2026

Proof-of-concept code for beating Google's ZK proof of quantum cryptanalysis

Python 6 Updated Apr 17, 2026

🪨 why use many token when few token do trick — Claude Code skill that cuts 65% of tokens by talking like caveman

Python 49,062 2,599 Updated Apr 18, 2026

Gene regulatory network containing signed transcription factor-target gene interactions

R 106 9 Updated May 27, 2025

A manifesto for AI-assisted modernisation of bioinformatics software.

Astro 36 1 Updated Apr 2, 2026

Repository to track versions of concrete strength data, models, and active learning proposals.

Jupyter Notebook 180 38 Updated Apr 24, 2026
Python 52 8 Updated Apr 10, 2026

A Python command line tool to query the Society of Thoracic Surgeons (STS) Adult Cardiac Risk Calculator API with bulk patient records.

Python 8 Updated Apr 17, 2026

Baochip 1x Silicon

SystemVerilog 349 32 Updated Apr 12, 2026

Autonomous experiment loop skill for Claude Code — port of pi-autoresearch

Python 284 27 Updated Mar 24, 2026

Autonomous experiment loop extension for pi

TypeScript 6,232 352 Updated Apr 28, 2026

A modernized rewrite of RSeQC (RNA-seq Quality Control)

Python 1 Updated Apr 14, 2026

Talk to your Mac, query your docs, no cloud required. On-device voice AI + RAG

C++ 1,488 77 Updated Mar 16, 2026

BullshitBench measures whether AI models challenge nonsensical prompts instead of confidently answering them, created by Peter Gostev.

Python 1,563 60 Updated Apr 28, 2026

"🐈 nanobot: The Ultra-Lightweight Personal AI Agent"

Python 41,187 7,220 Updated Apr 28, 2026

CLI proxy that reduces LLM token consumption by 60-90% on common dev commands. Single Rust binary, zero dependencies

Rust 37,622 2,273 Updated Apr 28, 2026

An ontology of cell types

Makefile 196 60 Updated Apr 28, 2026

Edit Banana: A framework for converting statistical formats into editable.

Python 5,095 338 Updated Apr 25, 2026

Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞

TypeScript 365,803 74,978 Updated Apr 28, 2026

A symbiotic AI agent that remembers everything, challenges you, and extends your cognition.

Shell 695 72 Updated Apr 18, 2026

Official, Anthropic-managed directory of high quality Claude Code Plugins.

Python 18,102 2,183 Updated Apr 28, 2026

👻 Ghostty is a fast, feature-rich, and cross-platform terminal emulator that uses platform-native UI and GPU acceleration.

Zig 51,878 2,463 Updated Apr 27, 2026

🐹 Deep clean and optimize your Mac.

Shell 49,464 1,531 Updated Apr 27, 2026

Conductor is a Gemini CLI extension that allows you to specify, plan, and implement software features.

3,501 274 Updated Apr 20, 2026

A small collection of formally verified junk theorems provable in Lean4 + Mathlib.

Lean 96 2 Updated Dec 24, 2025

An Explicit Algebraic Cycle for a Non-Quasi-Decomposable Hodge Class on the Fermat Hypersurface X₃₃⁴

Lean 9 3 Updated Dec 22, 2025

Azul board game AI using AlphaZero MCTS with MLX neural networks

Rust 7 Updated Dec 22, 2025

A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.

Python 19,661 2,195 Updated Apr 27, 2026
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