User friendly and accurate binder design pipeline

Download IMD gridded rainfall, minimum and maximum temperature data as netCDF files from your terminal.

The tRNA adaptation index

gtAI is a new package implemented in python to effectively estimate the tRNA adaptation index (tAI).

Graph-based assembly phasing

De novo assembler for single molecule sequencing reads using repeat graphs

WebCM is a web platform used to develop and run bacterial simulations

single cell Flux Estimation Analysis (scFEA)

Bayesian Network implementation of BacArena

Workflow to assign Taxonomy to a bacteriophage genome isolate

Dynamic model of a synthetic gut community

Course website "Introduction to Containers and Snakemake for Reproducible Research"

Python package to study microbial communities using metabolic modeling.

Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling

SCiFI performs function-informed clustering

Using COBRApy to model metabolic networks

A tutorial for making a personal research website with Github and Quarto

Bioinformatics Pipeline and Visualization resources

http://huttenhower.sph.harvard.edu/waafle

Phage Annotation using Protein Structures

Ultra-fast preprocessing and quality control for long-read sequencing data

Metagenomic Estimation of Dietary Intake and Content.

Horizontal gene transfer (HGT) identification pipeline

Human polyoma BK (BKPyV) typing tool

Tools to filter SAM/BAM files by percent identity and percent of matched sequence

A versatile pairwise aligner for genomic and spliced nucleotide sequences

This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and benchmarking scores for reconstructor models. Reconstructor…

Accurate identification of bacteriophages from metagenomic data using Transformer