LLM-powered personalized daily lists of scientific papers

AI agents running research on single-GPU nanochat training automatically

Inkwell: Markdown to publication-quality PDF. Live preview, Pandoc + XeLaTeX compilation, runnable code blocks, and LaTeX template management for VS Code / Cursor.

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A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

VSCode theme based off the easemate IDE and Jetbrains islands theme

PaperBanana: Automating Academic Illustration For AI Scientists

A framework for single cell analysis

Spatial Transcriptomics Capture Location Deconvolution

AUCell: score single cells with gene regulatory networks

Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞

PEAK-QC: Periodicity Evaluation in ATAC-seq as Key aspect in Quality Control

Pareto Task Inference in Python

Exploring multicellular coordination from single-cell gene expression / multi-omics using mutlilayer network representations

Minimal plugin that lets Claude Code call you on the phone.

CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.

Disk-based sparse matrix stats

Fragment file toolkit

Regulatory element modules for GRCh38

A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.

R package implementation of Milo for testing for differential abundance in KNN graphs

rapids-singlecell: GPU-accelerated framework for scRNA analysis

A list of AI autonomous agents

"RAG-Anything: All-in-One RAG Framework"

🐍 Community-driven Python implementation of TOON

🎒 Token-Oriented Object Notation (TOON) – Compact, human-readable, schema-aware JSON for LLM prompts. Spec, benchmarks, TypeScript SDK.