Starred repositories
A multimodal model predicting chromatin-associated proteins binding on the human genome.
TEtrimmer: a novel tool to automate manual curation of transposable elements
Cross-platform software to draw phylogenetic trees
Tool for plotting sequencing data along genomic coordinates.
Fully automated end-to-end framework to extract data from bar plots and other figures in scientific research papers using modules such as OpenCV, AWS-Rekognition.
An open-source AI agent that brings the power of Gemini directly into your terminal.
ReLE评测：中文AI大模型能力评测（持续更新）：目前已囊括335个大模型，覆盖chatgpt、gpt-5.2、o4-mini、谷歌gemini-3-pro、Claude-4.5、文心ERNIE-X1.1、ERNIE-5.0-Thinking、qwen3-max、百川、讯飞星火、商汤senseChat等商用模型， 以及kimi-k2、ernie4.5、minimax-M2、deepseek-…
Readest is a modern, feature-rich ebook reader designed for avid readers offering seamless cross-platform access, powerful tools, and an intuitive interface to elevate your reading experience.
Fair-code workflow automation platform with native AI capabilities. Combine visual building with custom code, self-host or cloud, 400+ integrations.
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
This package contains the original 2012 AlexNet code.
Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
A pipeline for predicting and masking transposable elements in multiple genomes.
Manipulate and generate figures for trees in Newick format
Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model
Blazing fast toolkit to work with .hic and .cool files
Implementation of Positional Burrows-Wheeler Transform for genetic data
Helper Functions for Interactive Tree Of Life (iTOL)
Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
AlphaFold 3 inference pipeline.