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Printable laboratory notebook

60 6 Updated May 1, 2023

Quarto template for ASM mSystems

TeX 6 Updated Nov 29, 2022

Downstream processing of VAMB binning for Viral Elucidation

Python 55 7 Updated Jul 3, 2024

Supporting code for uncultivated gut virus manuscript

Python 80 20 Updated Jul 17, 2023

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

R 643 194 Updated Feb 27, 2026

Shiny gadget for labeling points on ggplot

R 188 19 Updated Mar 12, 2021

timelapse + trees = treelapse

JavaScript 8 Updated Jan 2, 2020

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

Python 92 38 Updated Aug 22, 2025

Yet Another Pipeline

Python 3 4 Updated Aug 21, 2013

PAired-eND Assembler for DNA sequences

C 138 26 Updated Dec 21, 2020

An implementation of the Grammar of Graphics in R

R 6,905 2,132 Updated Mar 29, 2026