Lists (22)
Bioinformatics
182 repositories
Command Line Tools
Utilities to make life easier on the command line.43 repositories
Computational Biology
49 repositories
Data and Code for Publications
2 repositories
Data Visualization
64 repositories
Database Tools
4 repositories
Deep Learning
2 repositories
HLA
8 repositories
Learning Statistics
17 repositories
Mac apps
7 repositories
Matrix Factorization
6 repositories
nim-lang
3 repositories
PDF Tools
Tools for dealing with the PDF file format.1 repository
Python package development
19 repositories
R package development
35 repositories
Regression
9 repositories
Rust
13 repositories
Single-cell Genomics Analysis
62 repositories
Spatial Transcriptomics
2 repositories
Tools for Academic Research
Tools designed to advance academic research.39 repositories
Web App Development
Libraries, packages, tools, and resources for building web applications.204 repositories
WebAssembly
Web apps powered by WebAssembly1 repository
Starred repositories
Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.
Shadow any website for offline viewing, with the JavaScript stripped out
scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underlying cyclic signals
Easy-to-use and high-performance TypeScript library for data analysis. Works with tabular, geospatial and vector data.
CRAFT: a generative transformer for embedding TCRβ repertoires and detecting immune perturbation
Python package for making UMAP interpretable with exact feature contributions
Rust GUI components for building fantastic cross-platform desktop application by using GPUI.
fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Repository to ZIP Plink2 LD files and have random access
fastVEP: High-performance Variant Effect Predictor in Rust
Production-ready KV-backed HNSW implementation in Rust using LMDB
Tool to build & run portable, lightweight, self-contained virtual machines.
A high-performance HGVS variant nomenclature parser and normalizer written in Rust
A research agent system deeply rooted in your Zotero library.
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
WebGPU physics engine based on the AVBD solver
Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.
Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data
Fast genomics quality control tools for sequencing data, written in Rust.
Ultra-fast spatial proteomics OME-Zarr viewer built in Rust.
Fast and accurate gene fusion detection from RNA-Seq data
We're back! Now firing notebooks out of a t-shirt gun.
Tumor Specific Antigen discovery: personalized cancer immunotherapy targets from curated shared antigen data
Fast, accurate & comprehensive text measurement & layout