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deepcadrt_run Public
uv project for training and predicting with DeepCAD RT
Python MIT License UpdatedApr 7, 2026 -
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fix_sleap_tracks Public
After merging SLEAP (1.4.1) .slp files, duplicate tracks with identical name might occur
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 30, 2025 -
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pybdv Public
Forked from constantinpape/pybdvpython tools for BigDataViewer
Python MIT License UpdatedDec 29, 2024 -
napari-layer-table Public
Forked from mapmanager/napari-layer-tablePython GNU General Public License v3.0 UpdatedJun 12, 2024 -
dask-image Public
Forked from dask/dask-imageDistributed image processing
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 14, 2024 -
rotalign Public
rotalign - rotate volume movies to match landmarks
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 4, 2024 -
undrift Public
Corrects local, non-linear drift in tissue by estimating dense optical flow and using it for warping images back to first frame.
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Python GNU General Public License v3.0 Updated
Feb 28, 2024 -
expansion_factor_bftm Public
Brute force template matching command line tool for expansion microscopy
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MSPT-toolkit Public
Forked from MSPT-toolkit/MSPT-toolkitMass-sensitive particle tracking analysis routine
Python MIT License UpdatedFeb 9, 2023 -
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Treadmilling-Speed-Analysis Public
Forked from paulocaldas/treadmilling-speed-analysisAutomated image analysis protocol to quantify the velocities of dynamic protein filaments
Jupyter Notebook GNU General Public License v3.0 UpdatedJun 23, 2022 -
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pyqt-stylesheets Public
PyQt5 stylesheets as submodule
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scikit-image Public
Forked from scikit-image/scikit-imageImage processing in Python
Python Other UpdatedSep 7, 2021 -
cellpose Public
Forked from MouseLand/cellposea generalist algorithm for cellular segmentation
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedAug 31, 2021 -
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lmt-analysis Public
Forked from fdechaumont/lmt-analysisLive Mouse Tracker analysis
Jupyter Notebook GNU General Public License v3.0 UpdatedDec 18, 2020
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