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hg19 annotation file is missing q-arms

Status: Open.

#36 In spcdot/CopyscAT;

· KatharinaSchmid opened on Mar 2, 2026

Document please!

Status: Open.

#35 In spcdot/CopyscAT;

· GuidoBarzaghi opened on Apr 9, 2025

How to get malignant/non-malignant output

Status: Open.

#34 In spcdot/CopyscAT;

· Krithika-Bhuvan opened on Oct 8, 2024

Error in BINSEG(sumstat, pen = pen.value, cost_func = costfunc, minseglen = minseglen, : Q is larger than the maximum number of segments 99 In addition: There were 50 or more warnings (use warnings() to see the first 50)

Status: Open.

#33 In spcdot/CopyscAT;

· sropri92 opened on Sep 6, 2024

Interpretive question - discrepancy between output files

Status: Open.

#31 In spcdot/CopyscAT;

· dgagler opened on Feb 28, 2024

differing number of bins for reference and sample

Status: Open.

#30 In spcdot/CopyscAT;

· Thienni-creator opened on Oct 31, 2023

How to generate the Fig. 2K heatmap in your paper?

Status: Open.

#29 In spcdot/CopyscAT;

· YiweiNiu opened on Oct 20, 2023

Missing: Chromosomes

Status: Open.

#28 In spcdot/CopyscAT;

· SITRR opened on Oct 18, 2023

Error in xtfrm.data.frame(x) : cannot xtfrm data frames

Status: Open.

#27 In spcdot/CopyscAT;

· RENXI-NUS opened on Sep 27, 2023

Error in dplyr::select(): ! Can't subset columns that don't exist. ✖ Columns AATATCCCAGGCCTTG-1, ACAACAGAGGACCTGC-1,

Status: Open.

#26 In spcdot/CopyscAT;

· mluciarr opened on Aug 30, 2023

Error in dmRead ("missing value where TRUE/FALSE needed")

Status: Open.

#25 In spcdot/CopyscAT;

· DaianeH opened on Jun 8, 2023

reproducing aGBM CNV findings

Status: Open.

#24 In spcdot/CopyscAT;

· mrichter23 opened on Mar 9, 2023