Write C++ tutorials and documentation in a restructured text dialect and convert it to HTML. In particular the scripts execute your example code and include their output into the produced HTML code.

Perl scripts for manipulating output from phylogenetic MCMC software (MrBayes, BEAST, PhyloBayes, etc)

A collection of shell and perl scripts for quantifying MCMC exploration of subtree prune-and-regraft tree space in MrBayes posteriors.