Stars
🍄 Qiime2 ITS classifiers for the UNITE database
skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
OCRmyPDF adds an OCR text layer to scanned PDF files, allowing them to be searched
A QIIME 2 plugin to generate and visualise microbial networks.
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
A Python package for creating UpSet plots using Plotly
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
Command-line program to download videos from YouTube.com and other video sites
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
A complete pipeline for metagenomic analysis