A collection of bioinformatics tools for use with galaxy written at Quadram Institute

Source code and data repository for broad spectrum antibacterial compounds

Code for the CKCS145 Fall 2023 Full Stack Developer course with Mihal Miu (Toronto Metropolitan University)

A demo for play amr sound on electron/web

Learn antimicrobial susceptibility testing techniques and how whole-genome sequencing and bioinformatics can be used to understand AMR

🧬 AI-powered multi-task model predicting E. coli resistance to Ciprofloxacin, Ceftriaxone & Amoxicillin from genomic features | AUC ~0.934 | Flask + RandomForest

NFGNB Shifting Dominance Dashboard — 12-year surveillance of NFGNB vs Enterobacterales in respiratory infections, Aseer Central Hospital

📈 Visualize Anti Microbial Research (D3.js). 🎨 Design and development of an interactive 🖥 Website for the iGem IISER team sharing their Research on Culturing hybrid bacteria named Coli Kaze. 🦠

ESKAPE Respiratory AMR Dashboard — 12-year surveillance from Aseer Central Hospital, Saudi Arabia

Exploring the AMR protein embedding landscape with ESM2 and Ankh. Interactive tool at HuggingFace Spaces.

BacDoc: Web-based bacterial identification & cultivation media predictor for resource-limited labs. Flask app with 800+ organism database, fuzzy matching, hybrid media generation from phenotypic parameters. Addresses AMR diagnostic gaps (free alternative to MALDI-TOF or VITEK system).

Structure-informed AMR resistance protein miner