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bwa

Here are 5 public repositories matching this topic...

LilValero / Human-Exome-Variant-calling-Using-Illumina-Data

Bioinformatics pipeline for Illumina human exome variant calling using FastQC, Trimmomatic, BWA, Samtools, Bcftools, and SnpEff. Demonstrates a reproducible workflow for NGS data analysis. #bioinformatics #genomics #variant-calling #ngs #pipeline

bioinformatics pipeline genomics reproducible-research ngs conda shell-script variant-calling illumina samtools bwa bcftools exome-sequencing portfolio-project snpeff

Updated May 16, 2025
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OrangePomeranian / Pipeline_with_Snakemake

Genomic Analysis Pipeline: Automate data preprocessing, variant calling, and annotation with Snakemake. Ensure reproducibility and reliability in genomic studies.

snakemake bioinformatics-pipeline variant-calling bwa snpeff fastqc raport

Updated May 3, 2024
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Moha-cm / RNAseq-Analysis

Bulk Rna-seq Analysis

r tcga gene-expression r-markdown bash-script rna-seq-analysis bwa fastqc gdc-portal trimmomatic getx deseq2-analysis featurescount

Updated Nov 14, 2024
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renatopuga / exoma-de-rato

Variantes genéticas de amostras de Rattus norvegicus utilizando GATK4

education bioinformatics annotations vep bwa exome gatk4 rattus-norvegicus

Updated Feb 24, 2021
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FastQ-Screen

StevenWingett / FastQ-Screen

Detecting contamination in NGS data and multi-species analysis

detection ngs metagenomics fastq bwa bowtie contamination bowtie2

Updated Nov 7, 2025
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