Personal Cancer Genome Reporter (PCGR)

A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.

Provide R access to the NCI Genomic Data Commons portal.

Cancer Predisposition Sequencing Reporter (CPSR)

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.

Explore the cancer relevance of your gene list

An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app

R package to work with ctDNA sequencing data

Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer

Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants

♋ 🆓 A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis

four class intro to R: basic syntax, data manipulation, data viz

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.

cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer

An interactive graphical illustration of genetic associations and their biological context

Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors

A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)

This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.