Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"
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Aug 22, 2024 - Python
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clinical
Here are 51 public repositories matching this topic...
Characterization of Germline variants
bioinformatics annotations clinical variants characterization pathogenicity clinvar vep diseases pathogenic-variants germline-variants exac acmg gnomad
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Mar 15, 2022 - Python
Clinically Adapted Model Enhanced from LLaMA
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Sep 1, 2023 - Python
A collaborative learning framework for empowering biomedical research
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Feb 13, 2026 - Python
[ACL 2024] This is the code for our paper ”RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records“.
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Sep 19, 2024 - Python
Integrating AI to Clinical Workflow
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Jun 22, 2022 - Python
A reported 96,480 people were diagnosed with melanoma in the United States in 2019, leading to 7230 reported deaths. Early-stage identification of suspicious pigmented lesions (SPLs) in primary care settings can lead to im- proved melanoma prognosis and a possible 20-fold reduction in treatment cost. Despite this clinical and economic value, eff…
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Sep 19, 2024 - Python
Official source for Spanish pretrained biomedical and clinical language models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).
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Nov 16, 2022 - Python
This is a broad purpose web application for various kinds of clinical use cases. It has a Flask server, a React front end, SurrealDB for a multimodel database, LLM integration, MCP, RAG, OSCAR EMR integration, and much, much more.
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Sep 19, 2025 - Python
This project develops compact transformer models tailored for clinical text analysis, balancing efficiency and performance for healthcare NLP tasks.
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Mar 26, 2024 - Python
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
surveillance ngs clinical metagenomics public-health diagnostics viruses erasmus virology rivm viromics virus-typing
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Sep 1, 2023 - Python
Disambiguating biomedical and clinical concepts with word embeddings
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Apr 17, 2018 - Python
Clinical oncology tumor board decision support system made by the Decider project.
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Jun 7, 2025 - Python
PyTorch library for MIMIC III Benchmark experiments
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Nov 14, 2023 - Python
Short scripts to demonstrate data available from MolecularMatch API (api key needed). Data includes clinical trials, drugs, publications, molecular information, bioinformatics, report generation and more.
cancer clinical healthcare mutations cancer-genomics diagnostics clinical-trials drugs healthcare-datasets diagnostic-reports clinical-data clinical-decision-support
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Jan 14, 2021 - Python
Automatic generation of descriptive radiological reports from X-RAY scans
computer-vision deep-learning clinical transformer xray tokenization captioning-images text-embedding radiology-reports
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Feb 13, 2026 - Python
Sobolev alignment of deep probabilistic models for comparing single cell profiles
python deep-learning clinical gene-expression cancer-genomics scrna-seq single-cell variational-autoencoder cell-lines scanpy pre-clinical kernel-machine-learning drug-response scvi-tools
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Feb 9, 2026 - Python
Run model evaluation and upload results on Clinical NER (NCER) leaderboard
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Oct 10, 2024 - Python
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