Enterprise-level backend architecture solution with fastapi、sqlalchemy,、celery、pydantic、grafana、docker...
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Apr 27, 2026 - Python
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fba
Here are 24 public repositories matching this topic...
An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
bioinformatics systems-biology computational-biology constraint-programming cobra metabolic-models sbml flux-balance-analysis metabolic-reconstruction constraint-based-modeling fba metabolic-engineering flux-variability stoichiometric-modeling fva metabolic-networks constraint-based-analysis constraint-based-reconstruction
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Apr 2, 2026 - Python
Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
bioinformatics computational-biology microbial-communities metabolism metabolic-models flux-balance-analysis fba genome-scale-metabolic-model community-simulations genome-scale-model metabolic-modeling
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Nov 28, 2023 - Python
Multivariate thermodynamics-based metabolic flux analysis in Python.
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Dec 19, 2023 - Python
AI-powered e-commerce automation platform. Open-source, self-hosted, BYOK. Product research · Listing generator · Review analyzer · Competitor monitor · Ad optimizer
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Mar 26, 2026 - Python
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
python docker simulation systems-biology computational-biology cobrapy sbml flux-balance-analysis constraint-based-modeling fba sed-ml biochemical-networks combine-archive omex-metadata biosimulators
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Feb 23, 2022 - Python
Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257
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Apr 15, 2021 - Python
FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)
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Oct 2, 2020 - Python
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
systems-biology computational-biology metabolism combine sbml flux-balance-analysis fba cell-biology sed-ml omex biosimulations biosimulators bigg
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Mar 31, 2026 - Python
Source code of various problems from HackerRank of mine
c java c-plus-plus competitive-programming python3 hackerrank hackerrank-solutions fba hackerrank-30dayschallange hackerrank-challenges
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Aug 17, 2021 - Python
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