cellNexus: Quality control, annotation, aggregation and analytical layers for the Human Cell Atlas data
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Updated
Apr 29, 2026 - R
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hca
Here are 2 public repositories matching this topic...
Pipeline to download the HCA Human Tonsil Atlas, extract raw counts and cell-type annotations from the HCATonsilData Bioconductor package, and export a compressed .h5ad file ready for python sc-verse analysis such as scVI model training. Reproducible environment managed with Pixi (R + Python).
python bioinformatics r bioconductor pixi scrna-seq single-cell hca seurat scanpy anndata h5ad scvi tonsil-atlas zellkonverter
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Updated
May 16, 2026 - R
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