htslib

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Efficient gzip to BGZF transcoder using half-decompression (2-4x faster than decompress+recompress)

rust cli bioinformatics compression gzip bam htslib bgzf

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Rewrite original UMICollapse in Rust.

rust bioinformatics arena data-structures htslib fastq deduplication string-search string-similarity hamming umis riir unique-molecular-identifiers

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