🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
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Updated
Dec 25, 2025 - R
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
R package for bayesNMf, a computationally efficient Gibbs sampler for Bayesian Poisson NMF which automatically determines the number of latent factors while quantifying uncertainties of the learned matrices.
Filling missing data for congressional voting dataset from UCI Machine Learning Repository
seqArchR: Identifying (promoter) sequence architectures de novo using NMF
An R code for classifying GCxGC data based on a NMF algorithm
Code for our ICML '18 paper "Closed-form Marginal Likelihood in Gamma-Poisson Matrix Factorization"
archR: Identifying promoter sequence architectures de novo using NMF
This project, done for GA Tech, explores relationship between health factors and hospitalization in NHANES dataset
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