🔍 Explore GEMM: a C/C++ library for efficient matrix multiplication using OpenMP, designed for parallel computing learners and practitioners.

Library containing code to manipulate mmCIF and PDB files

PDBRipper is a utility for extract an information from PDB-files.

An open library for the analysis of molecular dynamics trajectories

macromolecular crystallography library and utilities

Clickable PDB statistics: synchrotrons and MX software

A comprehensive library for computational molecular biology

A sample tool for users of Microsoft SQL Server to aid in troubleshooting otherwise difficult to diagnose issues. Provided AS-IS - see SUPPORT.md.

proteogenomics for protein analysis

Antimicrobial activity prediction for fungal effector candidates

Shiny app for structural clustering of molecules based on RMSD and k-means. It allows users to upload .cif or .pdb files, explore MDS plots, and download representative structures from each cluster. Born from the need to cluster AlphaFold 3 output structures. Includes .cif/.pdb file converter

A WinDbg symbol server for all recent versions of CPython.

Convert PDB files to coarse grained XYZ files

The LPCE project is designed to purify and process PDB structures to extract and filter ligands and remove unwanted components such as water molecules and junk ligands.

Convert EOM output to a full atom PDB files

Universal parser for Microsoft PDB files

This repository contains Python scripts to analyze MD & PELE simulations, to preprocess & process the system (pdb files), and many more.

pmUE (Protein Modelling Unreal Engine) - a repo for constructing a molecule visualizer plugin in Unreal

Read PalmOS PDB files with Java

Parts of Gemmi in WebAssembly.