Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

CellRank: dynamics from multi-view single-cell data

A guide to using a Seurat object in conjunction with RNA Velocity

Predict RNA velocity through deep learning

Toolkit for Single-Cell Velocity

𝒫robabilistic modeling of RNA velocity ⬱

Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images

Dynamical systems methods for RNA velocity analysis

Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments

Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

Module 4 for HKU Single-cell Workshop

Drop-in Rust + PyO3 acceleration of scvelo for single-cell RNA velocity

Simulation based inference of differentiation trajectories from RNA velocity fields.

Entrain: Predicting Environmental Regulators of Differentiation Trajectories

Tutorials for using BRIE

R pacakge for RNA velocity estimation with nonlinear models

RNA velocity inference for single cell and spatial data

Dockerized Velocyto for RNA Velocity

noSpliceVelo infers RNA velocity without separating unspliced and spliced transcripts

collab | DFC