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Commits on Sep 19, 2014

• fix merge conflicts

  

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Commits on Sep 18, 2014

• Merge branch 'master' of github.com:arq5x/gemini

  

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• sticky note go bye-bye

  

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• Support for fitCons: indicator of potential for interesting function in genomic variants

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Commits on Aug 26, 2014

• Merge branch 'master' of github.com:arq5x/gemini

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• Explicitly set ref alt ordering for TPED id.

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• update to latest versions of clinvar, dbsnp and cosmic

  

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• edit for latest clinvar

  

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• added unit test for cosmic

  

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• update for new versions

  

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Commits on Aug 24, 2014

• bump to 0.10.1a

  

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• v0.10.0

  

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• add versioning for 0.10.0

  

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• Merge branch 'master' of github.com:arq5x/gemini

  

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• A basic tool for Mendelian violations.

  

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Commits on Aug 23, 2014

• Merge pull request #323 from bgruening/master

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• change versioned_installations path to Aarons repository

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• Additional back compatibility check to avoid errors if annotation_dir argument not present #321

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• Merge pull request #321 from bgruening/annotation-dir

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• Merge pull request #322 from bgruening/versioned_installation

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Commits on Aug 22, 2014

• Add a new argument to specify a specific gemini version. This will fetch a pre-defined list of dependencies with hard version contraints.

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• Add lists of dependencies for pip and conda. This will define an entire dependency chain to enable reproducibility.

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• remove unnecessary numpy installation call

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• Install cloudbiolinux only if we want to install tools.

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• implement the --annotation-dir argument

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Commits on Aug 15, 2014

• Avoid using global gemini-config.yaml files when writing configuration to enable creation of multiple geminis on a single system #316

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Commits on Aug 14, 2014

• [BUG] fix for multiple wildcards on same column. Many thanks to Tommaso Pippucci at the UWCMG course\!

  

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Commits on Aug 6, 2014

• Fix the unit test for --format tped.

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• Fix for not finding the installed extra annotations.

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• Remove stale databases before running the tests.

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Commits on Aug 5, 2014

• Merge branch 'master' of github.com:arq5x/gemini

  

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• missing include

  

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Commits on Aug 4, 2014

• Fix TPED output.

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Commits on Aug 3, 2014

• Make top-level imports be lazy.

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Commits on Aug 2, 2014

• Extend samples table with new columns when amending.

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