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Starred repositories

70 stars written in Java
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《Hello 算法》:动画图解、一键运行的数据结构与算法教程。支持简中、繁中、English、日本語,提供 Python, Java, C++, C, C#, JS, Go, Swift, Rust, Ruby, Kotlin, TS, Dart 等代码实现

Java 125,015 15,035 Updated Apr 9, 2026

🇨🇳 GitHub中文排行榜,各语言分设「软件 | 资料」榜单,精准定位中文好项目。各取所需,高效学习。

Java 107,369 13,528 Updated Oct 12, 2024

🌍 针对小白的算法训练 | 包括四部分:①.大厂面经 ②.力扣图解 ③.千本开源电子书 ④.百张技术思维导图(项目花了上百小时,希望可以点 star 支持,🌹感谢~)推荐免费ChatGPT使用网站

Java 36,062 6,442 Updated Jun 13, 2023

Browse media content with your own rules on Android TV

Java 29,407 1,572 Updated Apr 9, 2026

PDF Parser for AI-ready data. Automate PDF accessibility. Open-source.

Java 13,843 1,158 Updated Apr 9, 2026

Generate diagrams from textual description

Java 12,885 1,170 Updated Apr 10, 2026

RStudio is an integrated development environment (IDE) for R

Java 4,982 1,165 Updated Apr 10, 2026

Zotero plugin to manage your attachments: automatically rename, move, and attach PDFs (or other files) to Zotero items, sync PDFs from your Zotero library to your (mobile) PDF reader (e.g. an iPad,…

Java 4,321 292 Updated Apr 16, 2024

hosts for android,implement by vpn mode,supports wildcard DNS records

Java 1,601 273 Updated Jan 6, 2026

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Java 1,061 382 Updated Mar 24, 2026

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Java 727 405 Updated Apr 9, 2026

Automatically exported from code.google.com/p/figtree

Java 462 118 Updated Mar 20, 2026

Accurate Species TRee ALgorithm

Java 277 70 Updated Apr 1, 2024

Bayesian Evolutionary Analysis by Sampling Trees

Java 272 84 Updated Mar 27, 2026

Maximum entropy modelling of species geographic distributions.

Java 262 99 Updated Jan 11, 2024

Bayesian Evolutionary Analysis Sampling Trees

Java 241 81 Updated Apr 9, 2026

Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:

Java 153 28 Updated Mar 10, 2026

Global Biotic Interactions provides access to existing species interaction datasets

Java 142 18 Updated Apr 9, 2026

The core Mesquite repository

Java 111 29 Updated Apr 10, 2026

tool for interactively visualizing large directed graphs in three-dimensional hyperbolic space

Java 89 15 Updated Aug 31, 2021

Posterior summarisation in Bayesian phylogenetics

Java 70 20 Updated Sep 27, 2025

Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks

Java 48 6 Updated Apr 28, 2025
Java 42 11 Updated Apr 2, 2024

Automatically exported from code.google.com/p/prottest3

Java 37 15 Updated Jan 22, 2018

forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research

Java 37 17 Updated Apr 1, 2026

Taxonomy-aware DNA sequence processing toolkit

Java 34 11 Updated Feb 23, 2026

Automatically exported from code.google.com/p/densitree

Java 29 3 Updated Jul 27, 2025

PhyDyn: Epidemiological modelling in BEAST

Java 21 8 Updated Dec 22, 2022

VIGOR4

Java 21 13 Updated Aug 15, 2025

BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.

Java 21 16 Updated Aug 11, 2025
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