Java 1-25 Parser and Abstract Syntax Tree for Java with advanced analysis functionalities.

PowerMock is a Java framework that allows you to unit test code normally regarded as untestable.

functional, durable data structures

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…

The Capsule Hash Trie Collections Library

The PSL software from the University of Maryland and the University of California Santa Cruz

AQUAS TF and histone ChIP-seq pipeline

Toolset to capture, simulate, synthesize and verify graph models

Basic and Advanced OBO Graphs: specification and reference implementation

A Feature Density Estimator for High-Throughput Sequence Tags

LA-PDFText is a system for extracting accurate text from PDF-based research articles (and an interface to be able to improve performance where needed). The system is open-source and provides a simp…

ChExMix: the ChIP-exo mixture model

A library for manipulating bioinformatics sequencing formats in Apache Spark.