Generate paleogeographic maps and animations through an easy-to-use interface.

Represents a binary matrix as an array of rooted trees.

Quartet-based species tree and tree of blob estimation

Three-item analysis python package

Tree Tool in Python

The Information Dynamics Toolkit xl (IDTxl) is a comprehensive software package for efficient inference of networks and their node dynamics from multivariate time series data using information theory.

Applications of Empirical Dynamic Modeling from Time Series

wQFM implementation in Java

Accurate Species TRee ALgorithm

RAxML Next Generation: faster, easier-to-use and more flexible

TreeSwift: Fast tree module for Python 3

Python tools for plate tectonic research.

Concise, consistent, and legible badges in SVG and raster format

Repository for ipython notebooks demonstrating functionality of pygplates

RESTool is an open source UI tool for managing RESTful APIs. It could save you time developing your own internal tools. A live example:

Creation of the Triton database of planktonic foraminifera

The interactive graphing library for Python ✨

Fast Robinson Foulds Supertrees

These scripts are those used in the thesis of Valentin Rineau.

Algorithms for quantifying associations, independence testing and causal inference from data.