Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

Interactive multiscale visualization for structural variation in human genomes

Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.

Copy number variant detection from targeted DNA sequencing

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Devel repository for minfi

C++ code for computing the convex hull of a polygon

🎯 Human transcription factor target genes from 6 databases in convenient R format.

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

A one header only DBSCAN (N-dimensions support) implementation

A C++11 library for serialization

mlpack: a fast, header-only C++ machine learning library

Collection of KNN algorithms in C++

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

An example of a fully custom Emacs configuration developed live on YouTube!

This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted aver…

Resource of human chromosome schematics & images

Emacs Python Development Environment

Kamil's dotfiles

cBioPortal for Cancer Genomics

tools for working with genome variation graphs

The C++ REST SDK is a Microsoft project for cloud-based client-server communication in native code using a modern asynchronous C++ API design. This project aims to help C++ developers connect to an…

The full power of R in Haskell.

Test suite to help you write your own C compiler

Test the Pthreads and Rcpp

Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.

MACS -- Model-based Analysis of ChIP-Seq